SE3720143

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11211
  • Solanum lycopersicum
  • SE3720143
  • Mutator
  • M8
  • SL2.40ch12:34262158-34262567
  • TTTTATTTA
  • GGAAAAAATACATAAATTAATACATTTTAAAAAATAATTACTGATTTTAGCGATATTTTT

Secondary structure and sequence

TSD    TIR
5'



3'
 TTTTATTTA     AAA         TA    -  -TTT        A    T     -    ---         ------------------    TATTACCATTTATAGCAATATTTTGTCAAATCTGTAATATGTATTAAAAGTGAATTATGTATGGAATATATATGAATTATAATTGTTTTTTGAAATATATCATGTTTGTTTGGTAAAAAAT
          GGAAA   TACATAAAT  ATAC AT    AAAAAATA TTAC GATTT TAGC   GATATTTTT                  GGTA                                                                                                                         
          |||||   |||||||||  |||| ||    |||||||| |||| ||||| ||||   |||||||||                  ||||                                                                                                                         T
          CCTTT   ATGTATTTA  TATG TA    TTTTTTAT AATG TTAAA ATCG   TTATAAAAA                  TAAG                                                                                                                         
TTTTATTTTC     -GA         --    A  TCAT        A    -     T    TTC         AAGTGAACTAGTGAAAAT    TAAATATTATGTTCAAATTATGTATAATATTTCTTGTTAAATAATAAGTGTATATTATATTTAAAATTACTACTTATTATGTAAATAGTGTGTAAAATTATGTGAATACTATGTTACATTG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End