SE3720144

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11212
  • Solanum lycopersicum
  • SE3720144
  • Mutator
  • M8
  • SL2.40ch03:57027068-57027479
  • TATTAAGTT
  • TTAAGTTGGGAAACTTACATAAATATAC

Secondary structure and sequence

TSD    TIR
5'



3' 
 TA    GTT      C          --    TATAATAAAAAAATAT        ---   AGCAATAATATTTTTATCTCACTTGATCACTTTTAATTCATTTATAATACAAGTTTAATACATATTACAAAAAATAATTTATTATTCACATATAATACAAATTTTAATGATGAATAATACATTTATCACACATTTTAATACATTTATAATAC
   TTAA   GGGAAA TTACATAAAT  ATAC                TTACCATT   TAT                                                                                                                                                        
   ||||   |||||| ||||||||||  ||||                ||||||||   |||                                                                                                                                                         
   AATT   CCTTTT AATGTATTTA  TATG                TTTTTTAT   TGA                                                                                                                                                        
TTG    -AT      T          AT    -----------TAAAA        TAA   CTAAAATCGCTATGAAAAACAAATAATGGTAAATATCGTTATGAAACAATTTAGACATTATACTTAATTTTCACTTAATACATACGTTATATATACTTAATATTAACAAAAAACTTTATATAGTACAAACAAACCATTTTTTAACAGTGTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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