SE3720145

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11213
  • Solanum lycopersicum
  • SE3720145
  • Mutator
  • M4
  • SL2.40ch07:48617193-48617882
  • TTCTTTTAA
  • GGAAAATTACGCG

Secondary structure and sequence

TSD    TIR
5'



3' 
TTCTTTTAAA     A  A    GCTAAACAAACTTATATTATTTA     TCATCATAGCTATAGTTTACTATAATTACCACTCGCGACTAATGTTATACATTAATTATGTGGGCTGACTTCGAGTTTGTATAATTAGTCACGTTTGTATATGTATAATTATCCGGGATATACAAATATGTATGATGTATAATTATTTAACCTATTTACATCTACAATTCACCTCTCTCTCACTCTCTGCCCTCTCTCGCTCGCCTCTCTCCTCCCTCTCCCAATCTCACTTTCCATATATACAAATGCATATGTATAATATACAAATATATACATATACAATTCACCTCTCTCCCACTATTT
          GGAAA TT CGCG                       ATTAC                                                                                                                                                                                                                                                                                                               
          ||||| || ||||                       |||||                                                                                                                                                                                                                                                                                                               G
          CCTTT AA GTGT                       CGGTG                                                                                                                                                                                                                                                                                                               
AATTTTCTTC     G  A    -------------------ATAT     TATTTTTATCGTATAATGAGAGCTATCGATAACAAACTATTAATGTTAAACATCGATGTACAATATACCTGCTCTCTCCGCTCACTCTGACCCTCTTTCTCCTCTCCGCTTTCTCTCTCCCTTTTCTCACCCTCTTTCCACTTAACAAATACATATAACCAATCTATTAACATACAATATGTATACATAAACATATTTTTCGTTCACTCTAACCCTCTCTCTCTTCTCTCCGCTCGCTGTGACCCTCTCCCTCCTCTCTCCGCTCGCTCTAGCTTTCTCCCTCCTCTCCAGTTTCTCTCTCCC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End
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