SE3720146

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11214
  • Solanum lycopersicum
  • SE3720146
  • Mutator
  • M6
  • SL2.40ch12:6668643-6669286
  • ATAATAGAA
  • G

Secondary structure and sequence

TSD    TIR
5'



3' 
     ATAATA  --           TATATAATATCAAAC   T    C   ----       CTATAACCATCGTTTGATTTAATTGTACCTCATAACAAATTGTTGCTATTTCGCCTCTCTCCTGGTGAATCTCGCTCGCCACTCTCATTCTCTCCCTCGCCTCTCTCGCTTTCTATACAAATTCAAATGTATAAAATGTGTTCTTATTTGTATAAAGCGAGAGAAAATTATATATCTCTCCCTTTCCCAGATCTCGCTCGTCAATCTCCCAGATTTCACTCGTTACCCTTGCCTCTCTCACTTATACAAATAGAAAATAAATGCATAAACTT
           GA  AGAGAAAATTG               TAC AATT AAA    TTAAATG                                                                                                                                                                                                                                                                                
           ||  |||||||||||               ||| |||| |||    |||||||                                                                                                                                                                                                                                                                                 
           CG  GAAAGTATATA               TAC TTTG TGT    AGTATAA                                                                                                                                                                                                                                                                                
AAGCTAATACT  TT           ---------------   -    -   TTTT       AGATACATTATCCATATCAAAGGTATAAACACGATGTATTGTTTGTATTTATACATATAAAGCGATATGTATATGTTTTCTTTCGTCAACACAATATGTATATGTTTTCTAATTAACATATTATACACAGACATATTTTGCTCTTTCTCTCTTTCCCTTTTCTTTTGATCCATCCCTTTATAAACACAGCATATTAATATTCATATATCCTGCGCTATATATATAAACGTACACATATATGTTAAAAGAGAGCGAAATATGTTTGTTTTTAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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