Plant MITE

SE3730152

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11220
Solanum lycopersicum
SE3730152
hAT
Hat6
SL2.40ch09:59699875-59700244
CACTGAAC
CAGTGTTATCAAAGGCG

Secondary structure and sequence

TSD TIR

5'

3'

CACTGAAC                 ---CGCTTAAACCC    -----  AA A   ---  AACGTGTTGAGCGCTTCACCTCGCTTTATGTGCGCTTCAGTGTCGTCATCAAGGTTCTAAGGGTGTTTGCCTTACCAGAGCCTCATATGAAGAAGTGACACTAAATAATTGATATACTTTATCATCAATT
        CAGTGTTATCAAAGGCG              TGAA     GC  G CTC   AA                                                                                                                                  
        |||||||||||||||||              ||||     ||  | |||   ||                                                                                                                                   
        GTCACAATAGTTTCCGC              CGAG     AT  A CAC   CG                                                                                                                                  
CAAGTCAC                 TTTTCACGTTTTTT    ATTCC  -- -   TCC  AAATTCGCGTTTCGCATTTATTTCGCACCCGAAATTACTTTTTTCCGTGTTTCCCTCTTTTCTTATGTTTATATATACAAATCAGTATCTGATTATTAATATTTGTACCTACTGTTTTTTACAGGTTTCT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3730152

CACTGAACCAGTGTTATCAAAGGCGCGCTTAAACCCTGAAGCAAGACTCAAAACGTGTTGAGCGCTTCACCTCGCTTTATGTGCGCTTCAGTGTCGTCATCAAGGTTCTAAGGGTGTTTGCCTTACCAGAGCCTCATATGAAGAAGTGACACTAAATAATTGATATACTTTATCATCAATTTCTTTGGACATTTTTTGTCATCCATGTTTATAATTATTAGTCTATGACTAAACATATATATTTGTATTCTTTTCTCCCTTTGTGCCTTTTTTCATTAAAGCCCACGCTTTATTTACGCTTTGCGCTTAAAGCCCTCACATACCTTAGAGCTTTTTTGCACTTTTCGCCTTTGATAACACTGCACTGAAC

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