SE3720156

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11224
  • Solanum lycopersicum
  • SE3720156
  • Mutator
  • M10
  • SL2.40ch08:51862174-51862833
  • TTTTAAGAA
  • TTTTAAGAACGGAAATGGATCAAAAATACCCTTAAACTATCAGAAATAGTTTAAATATATTTTTAAAATATATTTTGGCTTAAATATATC

Secondary structure and sequence

TSD    TIR
5'



3'
        AA      T  A         C    A      CA            A            A                      CTAA  G     C         A               ------AA   G              A   GC     A A              C                               C   TACT          CC          -G          C     CCG               A          -                 C  -----------------------CAT     CATT
 TTTTAAG  CGGAAA GG TCAAAAATA CCTT AACTAT  GAAATAGTTTAA TATATTTTTAAA TATATTTTGGCTTAAATATATC    CC TCAAA TGTAAGGTC AAAATACCCTTTTCA        ATC GTTAAATATCACTT GAT  CATGT G TGTCACATGGCATG CACATAAGTCAATAGAGTTCCACTCATGCCA GTA    AATAAATTTA  CCTAATTTCC  CAATTTTCTC ATTTT   TAGAATTTAGAAACG TTTCATTGAA AACATAGAACCCCTTTT CT                          TTCTC    
 |||||||  |||||| || ||||||||| |||| ||||||  |||||||||||| |||||||||||| ||||||||||||||||||||||    || ||||| ||||||||| |||||||||||||||        ||| |||||||||||||| |||  ||||| | |||||||||||||| ||||||||||||||||||||||||||||||| |||    ||||||||||  ||||||||||  |||||||||| |||||   ||||||||||||||| |||||||||| ||||||||||||||||| ||                          |||||     
 AGAATTT  GCCTTT CC AGTTTTTAT GGAA TTGATA  CTTTATCGAATT ATATGGAAATTT ATATAAAGTCGAATTTATATGG    GG AGTTT ATATTCCAG TTTTATGGGAAGAGT        TAG CAATTTGTAGTGAA CTA  GTACA C ATAGTGTACTGTAC GTGTATTCGGTTATCTCAAGGTGAGTACGGT CAT    TTATTTGAAT  GGATTAAAGG  GTTAAAAGAG TAAAG   ATCTTAAATCTTTGC AAAGTGACTT TTGTATCTTGGGGAAAG GA                          AAGAG    
A       -C      T  C         A    C      AG            -            G                      AAAA  G     A         A               AATTGTTC   A              C   GA     C C              T                               A   -CTT          -A          GG          A     AAA               C          C                 C  ATTTTGAATACATATAACACTTTAGC     TCCT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End