SE3720157

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11225
  • Solanum lycopersicum
  • SE3720157
  • Mutator
  • M8
  • SL2.40ch03:9728240-9728653
  • TTAACGATT
  • CGATTTGGGAAACTTACATAAATATAC

Secondary structure and sequence

TSD    TIR
5'



3' 
TTAA  A TT      C          --A   TAAAATAAAAAAATAT      --      GCAATAATATCTTTTTTTCACTTGATCACTTTTAATTCATTTTTAATACAAGTTTAATACATATTACAAATAACAATTTATTATTCATATATAATACAAATTTTAATAATGGATAATACATTTATCGCACATTTTAATACACTTATAATAC
    CG T  GGGAAA TTACATAAAT   TAC                TTACCA  TTTATA                                                                                                                                                       
    || |  |||||| ||||||||||   |||                ||||||  ||||||                                                                                                                                                       A
    GC A  CCTTTT AATGTATTTA   ATG                TTATTT  TAATGA                                                                                                                                                       
TTTA  A TT      T          ATC   -----------TAAAA      AT      CTAAAATCGTTATAAAAAATAAATAATGGTAAATATTGTTACGATACAGTTTAGATGTTATACTTAATTTTCACTTAATACATACGTTATATATACTTAATATTAACAAAAAACTTTATATAATACAAACAAACCATTTTTAAACTGTATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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