SE3750159

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11227
  • Solanum lycopersicum
  • SE3750159
  • PIF/harbinger
  • To1
  • SL2.40ch09:65736736-65737398
  • TAA
  • GGCCCGTTTGGCCATAAATTTTCCAAATA

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAG   --C            AAT          ATATTTGGAAAAAA           ------------------A     GTCCATACAATTTGCCATTATTTGGCAAATATTTTTGGGAAATATCCCAAATTTCTAAATACTAGTTTTTTCTAGTATTTGGGCCAAATCTCATTATTTGGGATATTTTAAAAATTAAAAATTTACCCCAATCTTTTATCTTTTACAAAAACACCCTCTCTAGTAGTTGTTTGCGTTGTATTACATCATTTTTTACGTGAACACCAAAATAGTGATGAAATATGTAGTGAATATTAAATAATGATATGATTGTTGATGAAAATTA
    GGC   CGTTTGGCCATA   TTTCCAAATA              TTTGGCAAATA                   TGTTT                                                                                                                                                                                                                                                                         
    |||   ||||||||||||   ||||||||||              |||||||||||                   |||||                                                                                                                                                                                                                                                                          
    TCG   GCAAACCGGTAT   AAAGGTTTGT              GAACCGTTTAT                   CCACT                                                                                                                                                                                                                                                                         
  AA   ATC            -AT          ------------AA           AATAAACTCACTTTTAAAC     TTAAAGTGGTACACAAACCGGTATTTTAAACCCTTTATATAAAGTGGAAAAATCTTATTATACTAAATATGTGTGTTCAAAATTTTTGATAGTTTTGATTGATTTTCAAACATAATGTTCAGTTACTTACAAGCAATGTTGTTATTGTTTATTACAGGTACTGTGATTTCGTTACACCATTAAACCTCACTCACGTTGTTCTTAATAAAGTATGTAGCACTTCATCTGTTTCATGTACTGAAACAATGGATTTCGGTTAAAAATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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