SE3750166

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11234
  • Solanum lycopersicum
  • SE3750166
  • PIF/harbinger
  • To6
  • SL2.40ch03:62026716-62027029
  • CAG
  • A

Secondary structure and sequence

TSD    TIR
5'



3' 
                C    C  --    --     TTAAATGGGCTTTAAAAAGTGGCTTTTACGTCAAAAAATAAAAAGTCATACTGAAATGACTTTTAAGTCAAAAAATAAAAAGTAGGGGGAGACCTACTTTTGGTTTTTGACTTATTTTAAGTCATTTTAA
                 AGGA TT  AGAG  CCCGT                                                                                                                                  
                 |||| ||  ||||  |||||                                                                                                                                  A
                 AGTG AA  TTCA  CAGTT                                                                                                                                  
ATTCTCCCACAAACCTA    -  TT    AC     TGGATGAAAATTCAGCCAAAAACTGAAGACTTACACAAACTGCTTATAATTTTTATTGAATTTTAATTATTTTTTACTGAATTTCATTAAATCCTTCACAACCCGTTCCAATTTTTACTAAATATTATTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3