SE3720168

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11236
  • Solanum lycopersicum
  • SE3720168
  • Mutator
  • M6
  • SL2.40ch01:66840608-66841272
  • ATTAAACAA
  • T

Secondary structure and sequence

TSD    TIR
5'



3' 
           AT      -  -            AAAATGACAAACTAATAATATTAAATAAATATAGTAGCTATCCTTTGATTTATTTGTGTTCCATAGCAAACTGTTTGTCAGTCCTTATCTCCATCATATTCTCGTTTGTTACTTCCCTCTCTCGCTCGTTTTCTGCAGCTCGCCTCTCTCGCTTTATACAATAGAATTGTATAAATTTTGTTTCTAATTGTATAAAGCGAGAGAAAATTGTATAAACGCATGCAAATACGTATATCTTCGTCCTATACACTTATAATTATATAATACAAATATTTCCCTGCCCAAGTCTCTTTTGCCTTTCCCG
             TAAACA AG GGATAATTGTAT                                                                                                                                                                                                                                                                                                                
             |||||| || ||||||||||||                                                                                                                                                                                                                                                                                                                 
             TTGAAA TG ATATTGTTTGTA                                                                                                                                                                                                                                                                                                                
AACAAATTACCCG      G  T            TTTTAAGTGTAAACACATATCGTTTCAAACATATTAACGCGAGGTATCGTTTAAATATACACATATTAAGCGTTATGTATATGTTAACTTCGCTTAAAATGTTTTGCTTAACATATTTTGCTCTTTCTCTATTTAATATGTTAAACTTAACATATTTTGCTCTTTCGCTCTTTCCGTCTTAACTTAACATATTTTACTCTTTTTCTCTTTCTATTTTTCTCTGAACGCGTCCCTTATATGTTAACTTAGCTTAACATATTTTGCTCTTTCTCTCTTTAATAAATGTTAAATTTAAACATATTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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