Plant MITE

SE3720170

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11238
Solanum lycopersicum
SE3720170
Mutator
M6
SL2.40ch04:58475635-58476293
TTAATTAAA
TTAATTAAAGGGTAA

Secondary structure and sequence

TSD TIR

5'

3'

         A      ------     A     AA   ----        TTTATATTTGTATGTTATAATAAAATTTGCATATTTGTGTTTCATAACAAATTTATATATGTATAATTTTATGTACATATACATTCGGAACGAATTGTACAAAACGAGAAAATGAGAAAGACAGAATTGAATTGTATAAAACAAGAAAGAGAAATTATATACAATTTGAATTTGTATAAAACAAGAAAGAGAGAAAGACAAAAAAAGACTTGTGCAGGGAATATACAATTGAATCGAATTGTATAAAACGAGAAAGAGATAAATTATATACAATTTGAATTTGTAT
 TTAATTAA GGGTAA      CTTTC TATAT  TCA    ATATACAA                                                                                                                                                                                                                                                                                              
 |||||||| ||||||      ||||| |||||  |||    ||||||||                                                                                                                                                                                                                                                                                              A
 AATTAATT CCTATT      TCTTA CTGTT  TCA    TATATTTT                                                                                                                                                                                                                                                                                              
A        C      AACGTA     -     --   TTAT        ATTTATATCATCGATTAAAAAAATAAATAAACTCAATGTATCGTTTGACAAACAGTAGGGAGAGAAGGAGTATAAGAGCGAGCGGTAAGAGGGAGTGAGCGAGCGAATAAGGACAGCGAGCGAAGAGAGCGAAATATATTATCTTAACATATTTAACACAAAGATTAACATATTTCGCTCTCTTTTAACATACTTGCATACGTTTATGTACATAGAAGCAGCATATATGAATATTAATATGTTATGTTAATAAAGTGACGCGTTCAGAGAAAACAGAAAGAGCAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3720170

TTAATTAAAGGGTAACTTTCATATATAATCAATATACAATTTATATTTGTATGTTATAATAAAATTTGCATATTTGTGTTTCATAACAAATTTATATATGTATAATTTTATGTACATATACATTCGGAACGAATTGTACAAAACGAGAAAATGAGAAAGACAGAATTGAATTGTATAAAACAAGAAAGAGAAATTATATACAATTTGAATTTGTATAAAACAAGAAAGAGAGAAAGACAAAAAAAGACTTGTGCAGGGAATATACAATTGAATCGAATTGTATAAAACGAGAAAGAGATAAATTATATACAATTTGAATTTGTATAAAACGAGAAAGACAAAAGAGACTTGCGCAGTGAAATAATTGTATTGTATAATTATAAGTATATACGACGAAGATACATGTATTTGCATACGTTCATACAATTTTCTCTCGCTTTATACAATTAGAAACACAATTTATACAATTCTATTATATAAAGCGAGAGAAGCGAGCGACAGGAATAAGCGAGCGAGTGAGGGAGAATGGCGAGCGAGAATATGAGGAAGAGAGGGATGACAAACAGTTTGCTATGTAACTCAAATAAATAAAAAAATTAGCTACTATATTTATTTTATATTATTACTTTGTCATTCTATGCAATTATCCCTTAATTAAA

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