Plant MITE

SE3720173

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11241
Solanum lycopersicum
SE3720173
Mutator
M4
SL2.40ch10:52914299-52914984
TTTCCTAAA
T

Secondary structure and sequence

TSD TIR

5'

3'

       AAAAGGAAACTTTCACATATAACCACTTAAAAATAATTAATTACTCTCCATATCTATAGTTTGATAATTACAATTTGTAACTACATATCATATGGAAGAAGAGAGATCGAGGGAGACTGCGATAGAGAGGTGAGATAGAGGGGGAAAAGAGTGGGAGAAAGGTGAATTGTATATGTATATTGGTTAGATAATTATATATTACACATATGTATTTGTATATATGGCAAGAGAGATTAGGAGACGGAGGAGAGAGGCGAGCGAGAGCGAGAGAGAGAGAGGCGAGCGAGGGAGGGCAGAGAGTGGGAGAGAGGTGAATTGTATATGTACATAATTATA
 TTTCCT                                                                                                                                                                                                                                                                                                                                                
 ||||||                                                                                                                                                                                                                                                                                                                                                T
 AATCCT                                                                                                                                                                                                                                                                                                                                                
A      TTCTCTTTTTAATGCGCCGATTCGTTTGAATATAATAAATTAATGAGTAGTATCAATATCAAACGATATTAATACTGAACGCTGATTGTAATATGTAATTAATGCACCCGACTGAAGCTGAAACATATTAATCAGTACAAACATATACATATTAAGTGGTCCTATATGTTTATTTATACATATTATATGTTAAAAAATCTGATATACGTATATGTTAAGTGGAGAGAGGGTGAGAGACGGGAGAGAGGAGTGAGAGAGCTAGAGCGAGCGGAGAGAGTAGGGAGAGGGTTAGAGCAAACGGTAAATATGTTTACATATACATATTATATGTCGATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3720173

TTTCCTAAAAGGAAACTTTCACATATAACCACTTAAAAATAATTAATTACTCTCCATATCTATAGTTTGATAATTACAATTTGTAACTACATATCATATGGAAGAAGAGAGATCGAGGGAGACTGCGATAGAGAGGTGAGATAGAGGGGGAAAAGAGTGGGAGAAAGGTGAATTGTATATGTATATTGGTTAGATAATTATATATTACACATATGTATTTGTATATATGGCAAGAGAGATTAGGAGACGGAGGAGAGAGGCGAGCGAGAGCGAGAGAGAGAGAGGCGAGCGAGGGAGGGCAGAGAGTGGGAGAGAGGTGAATTGTATATGTACATAATTATATATAGCTGTATATTATACATATACATTTGTATAAATGGCAAACGAGATTGGGAGAGGGATGAGAGAGGCGAGCGAGATCGAGAGAGTGAGGAGAGAGGGCAGAGAGTGGGAGAGAGGTGAATTGTATATGCATATAGTCTAAAAAATTGTATATTATACATATTTATTTGTATATCCTGGTGAATTATACATATACAAACATGACTAATTATACAAAGTCGAAGTCAGCCCACGTAATTAATGTATAATGTTAGTCGCAAGTCATAATTATAGCAAACTATAACTATGATGAGTAATTAAATAATATAAGTTTGCTTAGCCGCGTAATTTTTCTCTTTCCTAAA

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