SE3720175

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11243
  • Solanum lycopersicum
  • SE3720175
  • Mutator
  • M2
  • SL2.40ch03:17484825-17485149
  • TTACTTATT
  • GGGATAATGCACAAGTACCCCTCAACCTATGCCCGAAATCTCAGAGACACACTTATACTATACTAAGGTCCTATTACCCCCCTGAACTTATTTTATAAGTAATTTTCTACCCCTTTATATCCTACGTGGCACTAGTTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TTACTTATT          A          -           C                             C                                 A         C         A  T C            G    AAAAAAAAGTCAA   TC
         GGGATAATGC CAAGTACCCC TCAACCTATGC CGAAATCTCAGAGACACACTTATACTATA TAAGGTCCTATTACCCCCCTGAACTTATTTTAT AGTAATTTT TACCCCTTT TA C TACGTGGCACTA TTTG             CCT  
         |||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||| || | |||||||||||| ||||             |||   
         CCCTATTACG GTTCATGGGG AGTTGGATACG GCTTTAGAGTCTCTGTGTGAATATGATAT ATTCCAGGATAATGGGGGGACTTGAATAAAGTA TTATTAAAA ATGGGGAAA GT G ATGCACCGTGAT GAAC             GGA  
TTATTCATT          G          G           A                             T                                 A         A         A  T T            A    --------ACCCG   TG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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