SE3720179

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11247
  • Solanum lycopersicum
  • SE3720179
  • Mutator
  • M5
  • SL2.40ch04:458252-458566
  • TATAATAAT
  • GGGAAAAGGGTCTGAAAAATACTTTCAATTTTGGTTGAAATTGCTGTTACGATATCAAACTTTATGGACAACCTTTTACCCCCTACACTATTT

Secondary structure and sequence

TSD    TIR
5'



3'
TATAATAAT                 A   C   CAA          A    C           C  AC    T   CA       -     -C          TGAAATATA    A        TAT        A      -   TAC    TATAA
         GGGAAAAGGGTCTGAAA ATA TTT   TTTTGGTTGA ATTG TGTTACGATAT AA  TTTA GGA  ACCTTTT ACCCC  TACACTATTT         TTTT AAGGTATA   GTGCCCAC TGGACA CAT   TATT     
         ||||||||||||||||| ||| |||   |||||||||| |||| ||||||||||| ||  |||| |||  ||||||| |||||  ||||||||||         |||| ||||||||   |||||||| |||||| |||   ||||     T
         CCCTTTTTCTAGACTTT TAT AAA   GAAACTAGCT TAAT ATAGTGCTATG TT  AAAT TTT  TGGAAAA TGGGG  ATGTGATAAA         AAAA TTCCATAT   TACGGGTG ACCTGT GTA   ATAA     
TAATAATAT                 A   -   TTG          A    A           A  CC    T   AC       A     AA          TTATTACAG    C        --T        C      A   TTT    CGCAG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End