Plant MITE

SE3710180

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11248
Solanum lycopersicum
SE3710180
Tc1/Mariner
St1
SL2.40ch07:2435890-2436153
TA
TACTCCCTCAGTCTAATATTATTTGTCATG

Secondary structure and sequence

TSD TIR

5'

3'

     C   A    AAT             --------     TATTTTTAGAGTCAAACTATAAAAAATTTGACTAACATTTTAAGATGTATTTTTTCATCATATTAATATGCGAAAAATTATGATTTATAGTAC
TACTC CTC GTCT   ATTATTTGTCATG        GTTTC                                                                                             
||||| ||| ||||   |||||||||||||        |||||                                                                                              
ATGAG GAG CAGA   TAATAAACAGTAC        TAGCT                                                                                             
     T   G    CTT             AATGCGAA     TTCAGTTAAATCAACTAAAAATTTCCATTTAATTTAGTGTAATAAAGGTGTAAAATTTGTTTTTTTAATATATAAGATTTTAATATATTTTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3710180

TACTCCCTCAGTCTAATATTATTTGTCATGGTTTCTATTTTTAGAGTCAAACTATAAAAAATTTGACTAACATTTTAAGATGTATTTTTTCATCATATTAATATGCGAAAAATTATGATTTATAGTACTTTTTTATATAATTTTAGAATATATAATTTTTTTGTTTAAAATGTGGAAATAATGTGATTTAATTTACCTTTAAAAATCAACTAAATTGACTTTCGATAAGCGTAACATGACAAATAATTTCAGACGGAGTGAGTA

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