Plant MITE

SE3750181

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11249
Solanum lycopersicum
SE3750181
PIF/harbinger
To2
SL2.40ch07:18857320-18858047
TAA
AGGCCTCATTTGTTTTCA

Secondary structure and sequence

TSD TIR

5'

3'

TA                  ---CATAAT   G          TAA - A   -   ---     CCCAATAAGTACGTTT    TTTAGGTCTGAATTTAAACCATTCGAATTCATTTCATTTGTTTTATTTTTTAAAAAACATCTAAATGGGTCTGAACGAATCAGATATGTAGGATACTCATGAAAATATTAAGATTTATTTGATAAGTTATCAAATAATAAATCATAACTTCTTTGCTTTGGGTTTAACATTTTATTTTATAACTAAAAACTTTCTCTCTCTCTTTTCTCAATCGAACACCATATTTTCTCTATAAGTTATTTTTCATATCCTTTCAAGAATTTTTTTTATATTAATAATTTTTTTGTAGTGAC
  AGGCCTCATTTGTTTTCA         GGA GTCTGAATCT   T C TTC AGA   TTCAT                GACC                                                                                                                                                                                                                                                                                                     
  ||||||||||||||||||         ||| ||||||||||   | | ||| |||   |||||                ||||                                                                                                                                                                                                                                                                                                      
  TCCGGAGTAAACAAAAGT         TCT TAGACTTAGA   C T ATG GTA   TTATA                ATTC                                                                                                                                                                                                                                                                                                     
AA                  AATTCTAAT   A          --- G -   T   AAC     ----------------    TAGACGTAATTCTAAACTCATAAAACTAGACTTATGTGTAAACTTATAATTCTACACTATAGAATTAGACTTATGATTTACTTATTACAACAAACAAAGGTTATAAACTTACACCTTCACTTTAACTTGTAATATAATTATTTGATAATATTTTAAAAGTAAAGTTATTTTATATAGTGAAAACTAATTTTTTTCAAAATTTTCAGTACTAAACTTCATGATAAAAAAGTAAGTTTTGGAACTATTTGTTGTCATGTGGTTTCTATAATAACGTTGTTCACAAGAACTGTGCG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3750181

TAAGGCCTCATTTGTTTTCACATAATGGAGGTCTGAATCTTAATCATTCAGATTCATCCCAATAAGTACGTTTGACCTTTAGGTCTGAATTTAAACCATTCGAATTCATTTCATTTGTTTTATTTTTTAAAAAACATCTAAATGGGTCTGAACGAATCAGATATGTAGGATACTCATGAAAATATTAAGATTTATTTGATAAGTTATCAAATAATAAATCATAACTTCTTTGCTTTGGGTTTAACATTTTATTTTATAACTAAAAACTTTCTCTCTCTCTTTTCTCAATCGAACACCATATTTTCTCTATAAGTTATTTTTCATATCCTTTCAAGAATTTTTTTTATATTAATAATTTTTTTGTAGTGACGCGTGTCAAGAACACTTGTTGCAATAATATCTTTGGTGTACTGTTGTTTATCAAGGTTTTGAATGAAAAAATAGTACTTCAAATCATGACTTTTAAAACTTTTTTTAATCAAAAGTGATATATTTTATTGAAATGAAAATTTTATAATAGTTTATTAATATAATGTTCAATTTCACTTCCACATTCAAATATTGGAAACAAACAACATTATTCATTTAGTATTCAGATTAAGATATCACATCTTAATATTCAAATGTGTATTCAGATCAAAATACTCAAATCTTAATGCAGATCTTAATATTCAAATGTGTATGCAGATTCAGATATCTTAATCTTAATGAAAACAAATGAGGCCTAA

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