Plant MITE

SE3720182

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11250
Solanum lycopersicum
SE3720182
Mutator
M5
SL2.40ch01:60824118-60824429
TTAGATTTA
TAGATTTATGGAAAAATGTCTGAAATATATCGGAACTTTGACTGAAATTG

Secondary structure and sequence

TSD TIR

5'

3'

T        -T                T    CGG  C    AC        TTATA  A    CAAACTT     ATGACCTTTCACCCATGCACTATTTAATAGTGTATTTTAAAGGTAAATATGTGCTCACGTAGACATCATAAATATTGCATAATT
 TAGATTTA  GGAAAAATGTCTGAAA ATAT   AA TTTG  TGAAATTG     AC ATGC       TGAAA                                                                                    
 ||||||||  |||||||||||||||| ||||   || ||||  ||||||||     || ||||       |||||                                                                                     
 ATTTAGAT  CCTTTTTATAGGCTTT TATA   TT AAAC  GCTTTAAC     TG TATG       TTTAA                                                                                    
         TC                T    AAA  A    CA        TACAA  C    ------A     GATACCTCTTAGAAAATGGGGAATGTGATAAATTATTAATAAAATTTCCATACATGCACGGGTGCACCTGTATAATTATAAATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3720182

TTAGATTTATGGAAAAATGTCTGAAATATATCGGAACTTTGACTGAAATTGTTATAACAATGCCAAACTTTGAAAATGACCTTTCACCCATGCACTATTTAATAGTGTATTTTAAAGGTAAATATGTGCTCACGTAGACATCATAAATATTGCATAATTATAAATATTAATATGTCCACGTGGGCACGTACATACCTTTAAAATAATTATTAAATAGTGTAAGGGGTAAAAGATTCTCCATAGAATTTAGTATCGTAACATCAATTTCGACCAAAATTAAAATATTTTTCGGATATTTTTCCCTTAGATTTA

Copy Cancel