SE3720184

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11252
  • Solanum lycopersicum
  • SE3720184
  • Mutator
  • M4
  • SL2.40ch05:18309636-18310357
  • TATATATTA
  • ATATATTAGGGAAAATTATACG

Secondary structure and sequence

TSD    TIR
5'



3'
 T      T       A  A    GCTA   AA     -TAT  TT        CA                CTATAATTACCA  T    CTAAC   ATACATTAATTACGTGGGCTGACTTCAAGTTTGTAGAGTTGGTCATGTTTGTTTATGTATAATTCGCCAGGATATACAAATACATATGTATAATATACAATTTTTTCAATCTATATACATATAAAATTCACCTCTCTCCCACGATCTACCCTCTCTCCTCCCTCTCTCAATCTCGCTCGCCTCTCTCCTCCCTCTCCCAATCTCACTTGCCATTTATACAAATGTATATGTATAATATACAGCTATATACAATTATATACATATACAATTCAC
  ATATAT AGGGAAA TT TACG    AGC  ACTTA    TA  TAATTACT  TTATAGCTATAGTTTG            CT GCGA     ATT                                                                                                                                                                                                                                                                                 
  |||||| ||||||| || ||||    |||  |||||    ||  ||||||||  ||||||||||||||||            || ||||     |||                                                                                                                                                                                                                                                                                 T
  TATATA TCCCTTT AA GTGT    TCG  TGAAT    AT  ATTAATGA  AGTATTGATATCAAAC            TA TTGA     TGT                                                                                                                                                                                                                                                                                 
AT      -       G  A    -ATA   -G     TTTT  TC        AG                ------------  -    -----   TAAACATCGATGTACAATAACCTCCTCTCTCCGCTCACTGATCCTCTCTCCTCTCTTCGCTCTCTCTCTCCCCTTTTCTCACCCTCTTTCCACTTTACATATGCATATCACCAATCTATTAACATATAATATGTATACATAAACATATATACTGTTCTCTCTAACCCTCTCCCTCCTCTCTCCGCTCGTTCTGACCCTCTCCCTCCTCTCTCCGCTCGCTCTAACTCTCTCCCTCCTCTCTACGCTCACTCTTTCCCATCTCTCACCCTCTCT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End