Plant MITE

SE3710186

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11254
Solanum lycopersicum
SE3710186
Tc1/Mariner
St1
SL2.40ch05:5856362-5856602
TA
TACTCTCTCCGTCCG

Secondary structure and sequence

TSD TIR

5'

3'

               TTAT        A    - T --  TTTTTAGAGTCAAACTATAAAATTTTTTACTATCATATTATTATGAAAAAATTGTAATTTATAGTAATTTTCATATAAGTTT
TACTCTCTCCGTCCG    TGTTTGTC TGAT T C  TA                                                                                  
|||||||||||||||    |||||||| |||| | |  ||                                                                                  T
ATGAGGGAGGCAGGT    ACAAACAG ACAA G T  AT                                                                                  
               CTTT        C    C - GA  AGCTTTCAATTAAACTCAATAAAAATTTCCATTTAATCTAGTGTAATTAAGCTATAAAACTTGTTTTTTTTAATCTATAAGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3710186

TACTCTCTCCGTCCGTTATTGTTTGTCATGATTTCTATTTTTAGAGTCAAACTATAAAATTTTTTACTATCATATTATTATGAAAAAATTGTAATTTATAGTAATTTTCATATAAGTTTTAGAATATCTAATTTTTTTTGTTCAAAATATCGAATTAATGTGATCTAATTTACCTTTAAAAATAACTCAAATTAACTTTCGATAAGTGCAACACGACAAACATTTCTGGACGGAGGGAGTA

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