Plant MITE

SE3720190

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11258
Solanum lycopersicum
SE3720190
Mutator
M2
SL2.40ch08:10555357-10555679
AAAATTTAA
AAATTTAAGGGATAATGCCCAGGTACCCCCTCAACTATGCCCGAAATCTCAGAGACACACTTATACTATACTAAGGTCTTATTACCCCCTGAACTTATTTTATTAATAATTTTTTACCCCTTTTTAGTCTACGTGGCACTA

Secondary structure and sequence

TSD TIR

5'

3'

 A      AA    T     C               -     C       C                                         -              TAA                                   ----TCTTGT     C   GA
  AAATTT  GGGA AATGC CAGGTACCCCCTCAA CTATG CCGAAAT TCAGAGACACACTTATACTATACTAAGGTCTTATTACCCCC TGAACTTATTTTAT   TAATTTTTTACCCCTTTTTAGTCTACGTGGCACTA          GGGTC AAT  
  ||||||  |||| ||||| ||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||   |||||||||||||||||||||||||||||||||||          ||||| |||   
  TTTAAA  CCCT TTACG GTTCATGGGGGAGTT GATAC GGCTTTA AGTCTCTGTGTGAATATGATATGATTCCGGGATAATGGGGG ACTTGAATAAAATA   ATTAAAAGATGGGGAAAAATCGGATGCACCGTGAT          TTCAG TTG  
AA      -A    T     T               A     A       A                                         G              TTC                                   CAAATTTTTT     -   GT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3720190

AAAATTTAAGGGATAATGCCCAGGTACCCCCTCAACTATGCCCGAAATCTCAGAGACACACTTATACTATACTAAGGTCTTATTACCCCCTGAACTTATTTTATTAATAATTTTTTACCCCTTTTTAGTCTACGTGGCACTATCTTGTGGGTCCAATGATGGTTGACTTTTTTTTAAACTAGTGCCACGTAGGCTAAAAAGGGGTAGAAAATTACTTATAAAATAAGTTCAGGGGGGTAATAGGGCCTTAGTATAGTATAAGTGTGTCTCTGAAATTTCGGACATAGATTGAGGGGGTACTTGTGCATTTTCCCAAAATTTAA

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