SE3710199

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11267
  • Solanum lycopersicum
  • SE3710199
  • Tc1/Mariner
  • St1
  • SL2.40ch06:39238375-39238621
  • TA
  • TACTCCCTCCAT

Secondary structure and sequence

TSD    TIR
5'



3' 
            --------CTGAAATTA    TCATGTTATGCTTATCAAAAGTCAATTTAACTAGTTTTCAAAGGTAAATTGGATCACTATAATTCGATATTTTAAATAAAAATACTAGATATTC
TACTCCCTCCAT                 TTAG                                                                                              
||||||||||||                 ||||                                                                                              T
ATGAGGGAGGTA                 AGAT                                                                                              
            ATAACAAGCAATATTAA    AAAAATCTTAGTTTAATAATTATAATCTACATAAAAAAATTAGTATAATTATACATTTTTTTTAATACTAAATGTCATGAAAAGTATATCAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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