Plant MITE

SE3720201

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11269
Solanum lycopersicum
SE3720201
Mutator
M6
SL2.40ch02:30438255-30438920
TTAAAAATA
G

Secondary structure and sequence

TSD TIR

5'

3'

TTAAAAATA     AA -- -----     TAA      ACTAATAAATCAAATTAAA       ATC ---  T  TAATTTAATTGTACCCTATAGCAAACTGTTTGTCAGTCACCTCTCTCCCTTAAACTCTCGCTTGCCACTCTCCCTCTATCGTTCGCTTTCTCTCACTTTTGTACAAACACAAGTGTATAAAATATGTTTCTGTTTGTATAAAGCGAGAAAAAATTGTATATATACATATATTTTCGTTCCTTTCTCTCCCCTCTCCCAGATCTCGCTCGCCACCCTCATTCTATCCCTTATCCAAACAAAAACGAAATGTATAAATTGTGTTTCTGTTTGTATAAAG
         GGGAA  T  T     GTATA   TGGTAA                   TGCTATA   A   CA TT                                                                                                                                                                                                                                                                                     
         |||||  |  |     |||||   ||||||                   |||||||   |   || ||                                                                                                                                                                                                                                                                                     T
         TAAAA  G  C     GAAAG   GTATAT                   GTATGTG   T   AA TA                                                                                                                                                                                                                                                                                     
        A     -- TT TTGTT     --T      ------------------C       --- TTT  G  TAAACATAAAATATAGTTTCAAACGTATTAACGCGAGGTATCGTTTGTACTTATGCATATTAAGCGATATGTATATGTTTCTTTGGTTAAAGTATTAAGCGATATGTATATGTTTTCTTTCTCAACATATATTTAGTTAACATGTTACACACATACATATTTTGCTCTTTCTCTCTTTCTGTTCTTTTAACCCGTCCCCTTATACACACAAAACATATTAATATTCACATATCCTGCTTCTATACACATAAACGTTCACATATATGTTAAAAGAGAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3720201

TTAAAAATAGGGAAAATTGTATATAATGGTAAACTAATAAATCAAATTAAATGCTATAATCACATTTTAATTTAATTGTACCCTATAGCAAACTGTTTGTCAGTCACCTCTCTCCCTTAAACTCTCGCTTGCCACTCTCCCTCTATCGTTCGCTTTCTCTCACTTTTGTACAAACACAAGTGTATAAAATATGTTTCTGTTTGTATAAAGCGAGAAAAAATTGTATATATACATATATTTTCGTTCCTTTCTCTCCCCTCTCCCAGATCTCGCTCGCCACCCTCATTCTATCCCTTATCCAAACAAAAACGAAATGTATAAATTGTGTTTCTGTTTGTATAAAGTGAGAGAAAATTGTATATACACTTGCAAATACACATATCTTCGTCCTATACACTTATAATTATACAAAACACACATATTCCCCTGCCCAATTTTCTTGTCTTTCTCTCTTTCTCGTTTTATACATACACACATTGTACAATTGATTTATATACAACTCTTTCTTTTGTATATGTATAGCGAATTATGAAATTGGTTTCTTTGTATATGTATAGCGAATTATACGTATTCATGTTTGCTATGGAGCGCAATTATGCAAACTTTGATATAAAATACAAATATGAATTTTGTGTATGCTATATGTGAAAGTTGTTCTTGAAAATA

Copy Cancel