SE3710203

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11271
  • Solanum lycopersicum
  • SE3710203
  • Tc1/Mariner
  • St3
  • SL2.40ch07:51426225-51426463
  • TA
  • TACTCCCTCCATTTCACAAAGAATAGACT

Secondary structure and sequence

TSD    TIR
5'



3' 
     C    A   CAC       A  -  ----A    GA      ---- CGAAGTTAAAGAAAATAAAGAAGACTTTTGATCATGTAATTCTAAATCAAAGTTATGTCAAATGTACAAAATT
TACTC CTCC TTT   AAAGAAT GA CT     GTTT  TTTGAC    T                                                                         
||||| |||| |||   ||||||| || ||     ||||  ||||||    |                                                                         G
ATGAG GAGG AAA   TTTCTTA CT GA     GAAA  ATTAGA    T                                                                         
     A    C   ATT       -  A  GGAAA    --      CAAA TTTTTCTTACTGTAGAAAGAAGAAAACCATTGTTGAAAAGTGCACCGTACAAATTTTGGTGTTCTAATTTTCC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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