SE3720204

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11272
  • Solanum lycopersicum
  • SE3720204
  • Mutator
  • M6
  • SL2.40ch12:44784372-44785141
  • TTTTTAAAA
  • TTTTAAAAGGG

Secondary structure and sequence

TSD    TIR
5'



3' 
T           ---------CAACTTTCACA     ---  A   AAAAATTTATATTTGTATGCTATAACAAAGTTTGCATAATTGTGCTCCATAGCAAACATAAAACTGTATAATTCGCTATACATATACAATTGTATAATTCGCTGGCCTATTTCGCTGCAATTGTATAATTCGCTATCCTATTTCACTACAATTGTATAATTTGCTGCCTATTTCGTTGCAATATTTTTATAAAATTTGTTTTGCATACAATTGAATCGAATTAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTGCTCTCGCTTTATATAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTATA
 TTTTAAAAGGG                    TATAG   CA ACA                                                                                                                                                                                                                                                                                                                                                          
 |||||||||||                    |||||   || |||                                                                                                                                                                                                                                                                                                                                                           
 AAAATTTTTCC                    TTGAT   TA GAT                                                                                                                                                                                                                                                                                                                                                          
            CTTTTAACATATATTATCAT     TAT  -   TTTATTTACTTCATCGATCTCAAACTAAATTAACACGAGGTATCGTTTGCAATCGGTTTCAAACAGTCCGCGGAGAGAGGGTTTTTAGAACGAGCGGTGAGAGGGAGGCCAGCGGAGAGAGCGAAATATGTGTTTTCACATATTTAAAACAAAGACAAAACGTATTTCGCTCTCTTTTAAAATATATGTGTACGTTTTTGTATATAGAAGCACAATATGTGAATTCATATATTAAATGTTTATAAAATGAAGTTAAGTTAACATCTGTTTACGTTTAAAATATGTTTATAACATCTCTTTTTCCGATTGTTTAATATGTTAAAGCTTAATATGTTAACGTTACTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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