SE3750206

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11274
  • Solanum lycopersicum
  • SE3750206
  • PIF/harbinger
  • To1
  • SL2.40ch04:5910546-5911207
  • TTA
  • GGGCCCGTTTGGCCATAAATTTTTCAAATA

Secondary structure and sequence

TSD    TIR
5'



3'
TTA    --C            AAT          AT   ----    AAAA TTTGGCAAATAATGTTTGTCCATATAATTTGTCATTATTTGGCAAATATTTTTGGCAAATACCCCAAATTTTCAAATATTAGTTTTTTCTAGTATTTGGGCCAAATATCATTATTTGGGATATTTTAAAAATTAAAATTTTACCCCAATCTTTTATCTTTTATAAAAACACCCTCTCTAGTATTTGCTTGCGTTGTATTACATCATTTTTTACGTGAACACCAAAATAGATGAAATATTTAGTGAATATTAAATAATGATATGATTGTTGATGAAAATTATTAAA
   GGGC   CGTTTGGCCATA   TTTTCAAATA  ATT    TGGG    A                                                                                                                                                                                                                                                                                             
   ||||   ||||||||||||   ||||||||||  |||    ||||    |                                                                                                                                                                                                                                                                                             A
   TTCG   GCAAACCGGTAT   AAAAGTTTAT  AAG    GTTT    A                                                                                                                                                                                                                                                                                             
  A    ATC            -CT          --   AACC    ---- TAATAAACTCACTTTTAAACCCACTTTAAAGTGGTACACAAACCGGTATTTTAAACCCTTTATATAAAGTGGAAAAATCTTTTTATACTAAATATGTGTGTTCAAAATTTTTGATAGTTTTGATTGATTTTCAAACATAATGTCCAGTTAACTTACAATCAATGTTGTTATTGTTTATCACAGGTACTGTGACTTCGTTACACCATTAAACCTCACTCACGTTGTTCTTAATAAGGTATGTAGCACTTCATCTATTTCATGTACTGAAACAATGGATTTCGGTTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End