SE3720207

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11275
  • Solanum lycopersicum
  • SE3720207
  • Mutator
  • M8
  • SL2.40ch03:57027068-57027479
  • AACTTAATA
  • GGAAAAATTACATAAATTAATACATTTTAAAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
 AACTTAATA     AA          TA    -  TT       TAATTACTGATTTT     TACTTTTTGTTTATTACCATTTATAGCAATACTTTGTTAAATCTGTAATATGAATTAAAAGTGAATTATGTATGCAATATATATGAATTATAATTGTTTTTTGAAATATATCATGTTTGTTTGGTAAAAAATTGTCACATTGTATTATA
          GGAAA  TTACATAAAT  ATAC AT  TAAAAAA              AGCGA                                                                                                                                                     
          |||||  ||||||||||  |||| ||  |||||||              |||||                                                                                                                                                     A
          CCTTT  AATGTATTTA  TATG TA  ATTTTTT              AATGG                                                                                                                                                     
ATAATTCAAC     -G          --    A  TT       ----------TATA     TAAATATCGTTATTATAAAAATAGAGTGAACTAGTGAAAATTAAGTAAATATTATGTTCAAATTATGTATAATGTTTTTTATTAAATAATAAGTGTATATTATGTTTAAAATTACTACTTATTATGTAAATAGTGTGTAAAATTATGTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End
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