SE3750210

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11278
  • Solanum lycopersicum
  • SE3750210
  • PIF/harbinger
  • To2
  • SL2.40ch11:16618033-16618791
  • TGT
  • AGGCCTCATTTGTTTGCACTTAATGGAGGTCTGAATCTTAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TGTTAACCATA               G  C    --T              T   -C      -   C   ------   TT   TA GTTTGGTTTTTAGGTCTTAATCTGAATCATTCAGATTCAGCCCATTAAGTTCATTTGTTTTATTTTTTTAAAAAAAACCTCTTGATGGGTCTAAAAAGGTCTGAATGAATCAGATCTGTAGGAGACTCTTAACAACATTCAGACTCATTTTAATAAGTTATCAAATAATAAATCATCGCTTCTCTGCTTTAAGCGTGCCTTTTTATCACATAACTGAAAACTTTCTTTCTCTCTTTTCTCAATCAAACACTATTTTTTTCCTCTTGAACTTGTAAGTTTTCATAAATCCTTTCAAGTTTTTTT
           AGGCCTCATTTGTTT CA TTAA   GGAGGTCTGAATCT AAT  ATTCAG ATT AGC      CTA  AAA  C                                                                                                                                                                                                                                                                                                               
           ||||||||||||||| || ||||   |||||||||||||| |||  |||||| ||| |||      |||  |||  |                                                                                                                                                                                                                                                                                                               T
           TCCGGAGTAAACAAA GT AATT   TCTCCAGACTTAGA TTA  TGTAGA TTA TAA      ACG  TAA  T                                                                                                                                                                                                                                                                                                               
         AA               G  -    TAT              T   TA      C   -   TTCTAA   --   -T CTAAGTTTACAAAACTAGACTTATGTGTACTTATAATTCTACACCAGAGATTTAAACTTGTGATTTATCAATTATGACAAACAAAAGTTATAGATTTATACGTACACTTTAATTGTAATTTAATTATGCTATAGTATTTTCTTAAAGTATAGTTGTTTTATATAACGAAAACTATTTTTTTTCACAAGTTTCAAAATTATTAGTTCTAAACCTTCATGTTAAAAAAAGTAAGTTTTTGGAACTATTTACGGTTATATGTTTGTTACAAAACGATATCAGTTATGTTCTTTTAATAATCATTTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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