SE3730212

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11280
  • Solanum lycopersicum
  • SE3730212
  • hAT
  • Hat10
  • SL2.40ch06:29408531-29408937
  • ACAATGAC
  • CAGGGGCGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
ACAATGAC   G      C   CGTTGGGTCCAGGGTGTTCACCCGAACACCCTTGACAAAAAAATACACGATTTGTATAAGGTAAATTTTCTATATATCTGTAGATGCATATTTTTTGAACCCCCTCAATAACAAGTAAAAATAGATGACTCAATGGTAAGACCCTTGAATATCCCCAGGTTCGAATTATTGCAACAACATTT
        CAG GGCGGA CCA                                                                                                                                                                                      
        ||| |||||| |||                                                                                                                                                                                       
        GTC CCGCCT AGG                                                                                                                                                                                      
CAGTAATA   A      -   TTCTAAAAGCAAGTCCTTCAAGCTTTTTCTTATTATATTCGCACATTTATTCAGAAAGCTTTATTCCGGGTTATTAAAAAAAACCCAAATTTTGGTGTAAAAACCGTGCAAAATTTTTATTTTTTTACGAACTTTTATGTCTTGACTAAGAAATTTGGAACTTTGATATTTTCTTTTATTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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