Plant MITE

SE3720217

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11285
Solanum lycopersicum
SE3720217
Mutator
M2
SL2.40ch11:12722071-12722396
TTTTATTTA
AGGGATAATGCCCAAGTACCCCTTCAACCTATGCCCGAAATCTCAGAGACACACTTATACTATACTAAGGTCCTATTACCCTCCTAAACTTATTTAATTAATAATTTTTTACCCCTTTTTAGCCTACGTGGCACTA

Secondary structure and sequence

TSD TIR

5'

3'

TTTTATTT     T     C                     C                                                   A         A  TAA                      C            ---------TCAT  G    CAA
        AGGGA AATGC CAAGTACCCCTTCAACCTATG CCGAAATCTCAGAGACACACTTATACTATACTAAGGTCCTATTACCCTCCT AACTTATTT AT   TAATTTTTTACCCCTTTTTAGC TACGTGGCACTA             GT GGCC   
        ||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||   |||||||||||||||||||||| ||||||||||||             || ||||   C
        TCCCT TTACG GTTCATGGGGGAGTTGGATAC GGCTTTAGGGTCTCTGTGTGAATATGATATGATTCCAGGATAATGGGGGGA TTGAATAAA TA   ATTAAAAGATGGGGAAAAATCG ATGCACCGTGAT             CA TTGG   
ATTTATTT     T     T                     A                                                   C         A  TTC                      A            CAAATTTTTTTTT  G    TAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3720217

TTTTATTTAGGGATAATGCCCAAGTACCCCTTCAACCTATGCCCGAAATCTCAGAGACACACTTATACTATACTAAGGTCCTATTACCCTCCTAAACTTATTTAATTAATAATTTTTTACCCCTTTTTAGCCTACGTGGCACTATCATGTGGGCCCAACGATGGTTGACTTTTTTTTTAAACTAGTGCCACGTAAGCTAAAAAGGGGTAGAAAATTACTTATAAAATAAGTTCAGGGGGGTAATAGGACCTTAGTATAGTATAAGTGTGTCTCTGGGATTTCGGACATAGGTTGAGGGGGTACTTGTGCATTTTCCCTTTTATTTA

Copy Cancel