SE3720218

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11286
  • Solanum lycopersicum
  • SE3720218
  • Mutator
  • M5
  • SL2.40ch01:86738544-86738860
  • TTTAAAGAA
  • TTTAAAGAAGGAAAAAAAGTCTGAAATATATCTGAACTTTGACCGAAAGTATTGTTACGATACCCAACTTTGGAAAGGACCTTTTACTCCCCTACACTACTTAATAGTGTATTATAAAGATATAT

Secondary structure and sequence

TSD    TIR
5'



3'
          AA      AA         T   -     A      C     GTA      C      C  C    GAA          ACT   - -TAC    C             A   A A     ATTTAC             AAAAA    GCATA
   TTTAAAG  GGAAAA  AGTCTGAAA ATA TCTGA CTTTGA CGAAA   TTGTTA GATACC AA TTTG   AGGACCTTTT   CCC C    ACTA TTAATAGTGTATT TAA G TATAT      CCACGTGGACATA     TATT     
   |||||||  ||||||  ||||||||| ||| ||||| |||||| |||||   |||||| |||||| || ||||   ||||||||||   ||| |    |||| ||||||||||||| ||| | |||||      |||||||||||||     ||||     A
   AAATTTC  CCTTTT  TCAGACTTT TAT AGATT GAAATT GCTTT   AACAAT CTATGG TT AAAT   TCCTGGAAAA   GGG G    TGAT AATTATTACATAA ATT C ATATA      GGTGCACTTGTGT     ATAA     
AAG       --      -C         T   G     -      A     AAC      A      T  A    ACC          -AT   A TACT    A             A   G C     CACACC             -AATA    ATATT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End