SE3710221

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11289
  • Solanum lycopersicum
  • SE3710221
  • Tc1/Mariner
  • St3
  • SL2.40ch09:11387587-11387842
  • TA
  • TACTCCCTCCGTTTTAAAATGAATGACC

Secondary structure and sequence

TSD    TIR
5'



3' 
                  AT A      CTATTTCCTTTTT        TC ---    ----   TGACCCTTTTCTTTTTTGGCAACACTTTAACTTTAACTTTAACTTTCCACGTGCTTGTTTAAGACCATATGAT
TACTCCCTCCGTTTTAAA  G ATGACC             AGTTTGTT  A   AAAA    GAA                                                                         
||||||||||||||||||  | ||||||             ||||||||  |   ||||    |||                                                                          
ATGAGGGAGGCAAAGTTT  C TACTGG             ATCAAACT  G   CTTG    AAA                                                                         
                  GT C      -------------        -- AAC    CCTC   TTCTTTTCTTTCTTCTGAAAAATTAGAACACAAGATTTAATTTCAAGACAGTTTACATGATTTTACGGGAAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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