Plant MITE

SE3750223

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11291
Solanum lycopersicum
SE3750223
PIF/harbinger
To1
SL2.40ch02:41484862-41485512
TTA
TAGGCCCCGTTTGGCCATAAATTTTCCAAATA

Secondary structure and sequence

TSD TIR

5'

3'

T     -CC       C    A      C     AT   -       AATT  -------------------     TAATGTTTGTCCATACAATTTGCCATTATTTGGCAAATATTCCAAATTTCCAAATACTAGTTTTTTCTAGTATTTGGGCCAAATCTCATTATTTGAGATATTTTAAAAATTAAAATTTTACCCCAATCTTTTATCTTTTACAAAAACACCCTCTCTAGTTGTTGTTTGCGTTGTATTACATCATTTTTTACGTGAACATCAAAATAGTGATAAAATATTTAGTGAATATTAAATAATGATATGATTGTTGATGAAAATTATTA
 TAGGC   CGTTTGG CATA ATTTTC AAATA  ATT TGGGAAA    TG                   GCAAA                                                                                                                                                                                                                                                                       
 |||||   ||||||| |||| |||||| |||||  ||| |||||||    ||                   |||||                                                                                                                                                                                                                                                                        
 ATTCG   GCAAACC GTAT TAAAAG TTTAT  AAG ACCGTTT    GT                   CCACT                                                                                                                                                                                                                                                                       
      ATC       A    C      -     --   A       ----  AATAAACTAACTTTTAAAC     TTAAAGTGGTACACAAACCGGTATTTTAAACCCTTTATATAAAGTGGAAAAATCTTTTTATACTAAATATGCGTGTTCAAAATTTTTGATTGTTTTGATTGATTTTCAAACATAATGTTCAGTTAACTTACAAGCAATGTTGTTATTGTTTATTACAAGTACTGTGATTTCGTTACACCATTAAACCTCACTCACGTTGTTCTTAATAATGTATGTAGCACTTTATCTGTTTCATGTACTGAAACAATGGATTTCGGTTAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3750223

TTAGGCCCCGTTTGGCCATAAATTTTCCAAATAATATTTGGGAAAAATTTGGCAAATAATGTTTGTCCATACAATTTGCCATTATTTGGCAAATATTCCAAATTTCCAAATACTAGTTTTTTCTAGTATTTGGGCCAAATCTCATTATTTGAGATATTTTAAAAATTAAAATTTTACCCCAATCTTTTATCTTTTACAAAAACACCCTCTCTAGTTGTTGTTTGCGTTGTATTACATCATTTTTTACGTGAACATCAAAATAGTGATAAAATATTTAGTGAATATTAAATAATGATATGATTGTTGATGAAAATTATTAAAAATTGGCTTTAGGTAACAAAGTCATGTACTTTGTCTATTTCACGATGTATGTAATAATTCTTGTTGCACTCACTCCAAATTACCACATTGCTTTAGTGTCATGAACATTATTTGTTATTGTTGTAACGAACATTCAATTGACTTGTAATACAAACTTTTAGTTAGTTTTGTTAGTTTTTAAAACTTGTGCGTATAAATCATATTTTTCTAAAAAGGTGAAATATATTTCCCAAATTTTATGGCCAAACACATGGTGAAATTTCACCCAAATTTTCAATCAAATAATGTTTGCCAAGAATATTTGAAAATCTATGACCAAACGCTAGCTTA

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