SE3720230

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11298
  • Solanum lycopersicum
  • SE3720230
  • Mutator
  • M2
  • SL2.40ch04:28555525-28555849
  • TTTTTTAAA
  • AAAGGGAAAATGCACAAGTACCCCCTCAACCTATGCCCGAAATCACAGAGACACACTTATACTATACTAAGGTCCTATTACCCCCCTGAACTTATTTTATAAGTAATTTTCTACCCTTTTTTAGCCTACGTGGCACTAGTTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTTTT       A    CA          C                  CA                     C             C                   A         C                           G    AAAAAAAG     CA
      AAAGGGA AATG  CAAGTACCCC TCAACCTATGCCCGAAAT  CAGAGACACACTTATACTATA TAAGGTCCTATTA CCCCCTGAACTTATTTTAT AGTAATTTT TACCCTTTTTTAGCCTACGTGGCACTA TTTG        TCAAC  
      ||||||| ||||  |||||||||| ||||||||||||||||||  ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||        |||||   
      TTTCCCT TTAC  GTTCATGGGG AGTTGGATACGGGCTTTA  GTCTCTGTGTGAATATGATAT ATTCCAGGATAAT GGGGGACTTGAATAAAATA TTATTAAAA ATGGGGAAAAATCGGATGCACCGTGAT GAAC        GGTTG  
AAATTT       A    AA          A                  AA                     A             A                   A         A                           A    ---ACCCG     CT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3