SE3720232

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11300
  • Solanum lycopersicum
  • SE3720232
  • Mutator
  • M4
  • SL2.40ch07:56326296-56327026
  • TTGAAGCAA
  • TGAAGCAAGGGAAAATTACGCGGATAA

Secondary structure and sequence

TSD    TIR
5'



3'
T  AAG         A  A    G    ACAA     -TAC  T          A  -              CT        ------C  T  C  ----------------  AACATTATACATTAATTAC TGGGCTAACTTCGAGTTTGTATAATTAGCATGTTTGTATGTGTATAGTTCGCCAGGATATACAAATAAATATGTATAATATATAATTTTTTAGCCTATATACATATACAATTCACCTCTCTCCCACTCTTTGCCCTCTCTCCTCCCTCTCTCAATCTCGCTCGCCTCTCTCTTCCCTCTCCCAATCTCGCTTGCCATTTATACAAATGTATATGTATAATATACAATTATATACAACTATATACATATACAATTC
 TG   CAAGGGAAA TT CGCG ATAA    ACTTA    TA TTAATTACTC TC ATGGCTATAGTTTG  ATAATTAC       AG CG GA                CT                   G                                                                                                                                                                                                                                                               
 ||   ||||||||| || |||| ||||    |||||    || |||||||||| || ||||||||||||||  ||||||||       || || ||                ||                   |                                                                                                                                                                                                                                                                
 AC   GTTCCCTTT AA GTGT TATT    TGAAT    AT AATTAATGAG AG TATCGATATCAAAC  TATTAATG       TC GA TG                TC                   G                                                                                                                                                                                                                                                               
A  GAA         G  A    A    --GG     TTTT  T          -  A              --        TTAAACA  -  -  TACAATAAACCTCCTC  ------------------T CTTTCACTCTGACCCTCTCTCCCCCCCCCCCCCCCCTTCTCACCCTCTTTTCCACTTAACATATACATAAAACCAATCTTAACATATAATATGTATACATTGACATATATACCATTCTCTCTAACCCTCTCCCTCCTCTCTCCGCTCGCTCTGACCCTCTCTCTTCTCTCTCCACTCGCTCCGACCCTCTCTCTCCACTCGCTCTAACTCTCTCCGCTCGCTCTAGCCTCTCCGTTTGCTCTCACCCTCTCTCCA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End