Plant MITE

SE3720233

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11301
Solanum lycopersicum
SE3720233
Mutator
M8
SL2.40ch07:15376026-15376437
ATTTTTTAT
ATGGGAAACTTACATAAATATAC

Secondary structure and sequence

TSD TIR

5'

3'

ATTTTTT        C          --    TATAATAAAAAAATAT        ---   AGCAATAATATTTTTATCTCACTTGATCACTTTTAATTCATTTATAATACAAGTTTAATACATATTACAAAGAATAATTTATTATTCACATATAATACAAATTTTAATGATGAATAATACATTTATCACACATTTTAATACATTTATAATAC
       ATGGGAAA TTACATAAAT  ATAC                TTACCATT   TAT                                                                                                                                                        
       |||||||| ||||||||||  ||||                ||||||||   |||                                                                                                                                                         
       TACCTTTT AATGTATTTA  TATG                TTTTTTAT   TGA                                                                                                                                                        
TATTTTT        T          AT    -----------TAAAA        TAA   CTAAAATCGCTATGAAAAACAAATAATGGTAAATATCGTTATGAAACAATTTAGATATTATACTTAATTTTCACTTAATACATACGTTATATATACTTAATATTAACAAAAAACTTTATATAGTACAAACAAACCATTTTTTAACAGTGTAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3720233

ATTTTTTATGGGAAACTTACATAAATATACTATAATAAAAAAATATTTACCATTTATAGCAATAATATTTTTATCTCACTTGATCACTTTTAATTCATTTATAATACAAGTTTAATACATATTACAAAGAATAATTTATTATTCACATATAATACAAATTTTAATGATGAATAATACATTTATCACACATTTTAATACATTTATAATACAATGTGACAATTTTTTACCAAACAAACATGATATATTTCAAAAAACAATTATAATTCATATATATTGCATACATAATTCACTTTTAATTCATATTATAGATTTAACAAAGTATTGCTATAAATGGTAATAAACAAAAAGTATCGCTAAAATCAGTAATTATTTTTTAAAATGTATTAATTTATGTAATTTTTCCATTTTTTAT

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