Plant MITE

SE3710238

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11306
Solanum lycopersicum
SE3710238
Tc1/Mariner
St3
SL2.40ch06:42676431-42676683
TA
TACTCCCTCCGTTTCAAAAAGGAT

Secondary structure and sequence

TSD TIR

5'

3'

                        -----A           C TGGAACAGAGTTTAAGAAAAGAAAGAAGACTTTTTAATCTTGTGGTTCTAAATTAAAGTTATGTCAAATGTACCAAAATGCCCTTT
TACTCCCTCCGTTTCAAAAAGGAT      GACTAGTTTGA T                                                                                      
||||||||||||||||||||||||      ||||||||||| |                                                                                      A
ATGAGGGAGGCAAAGTTTTTCTTA      TAGAGGAAAAA T                                                                                      
                        CAGGGA           - CAGGCAAAGTTTTTCTTACTGGGGAAAGGAAAAAACCGTTGTAATATTGAAATTGAAAGGTGCACCGTACAAATTCTGGTGTTCTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3710238

TACTCCCTCCGTTTCAAAAAGGATAGACTAGTTTGACTTGGAACAGAGTTTAAGAAAAGAAAGAAGACTTTTTAATCTTGTGGTTCTAAATTAAAGTTATGTCAAATGTACCAAAATGCCCTTTAATCTTGTGGTCTTAAACATGCCACGTGGAAAGTTAAAGTTATAATGTTGCCAAAAAAGGAAAGGGGTCATTCTTTTTGAAACGGACTAAAAAGGAGATAGGGACATTCTTTTTGAAACGGAGGGAGTA

Copy Cancel