Plant MITE

SE3750241

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11309
Solanum lycopersicum
SE3750241
PIF/harbinger
To1
SL2.40ch09:58778383-58779047
TTA
GCTAGCGTTTGGCCATAGATTTTCAAATA

Secondary structure and sequence

TSD TIR

5'

3'

  TTA   AG                  -      -T       A --   T   -    G   -    -   - A   AATTTCACCATGTGTTTGGCCATAGGATTTGGGAAATATATTTCACCTTTTTAGAAAAATATGATTTATATATACAAGTTTTAAAAACTATCAAAACTAACTAAAAGTTTGTATTACAAGTCAATTGGATGTTCGTTACAACAATAACAAATAGTGTCCATGACACTAAAGCAATGTAGTAATTTGGAGTGAGTGCAACAAGAATTATTCCATACATCGTGAAGTAGACAAAGTACATGACTTTGTTACCTAGAGCCAATT
     GCT  CGTTTGGCCATAGATTTT CAAATA  TATTGGA A  ATG TAT TTGA TGA AAAT TTG G TGA                                                                                                                                                                                                                                                                     
     |||  |||||||||||||||||| ||||||  ||||||| |  ||| ||| |||| ||| |||| ||| | |||                                                                                                                                                                                                                                                                      
     CGG  GCAAACCGGTATTTAAAA GTTTAT  TAAACCC T  ATA AAT GTTT TTA AAAC GGT T GTT                                                                                                                                                                                                                                                                     
ATTCC   --                  A      TA       - TT   -   C    A   C    A   A -   AAACAGTAATAAACCGTTTATAAAAACCGTTTATAGGGTTTAAAGGTTTATGATCAAAAAAGATCATAAACCCAGTTTAGAGTAATAAACCCTATAAAACTTTTAAAATTTAAAATGGGGTTAGAAAATAGAAAATGTTTTTGTGGGAGAAATCATCAACGAACGCAACATAATGTATTAAAAAATGCACTTATGGTTTTATCACTACTTTATAAATCACTTATAATTTATTACTATATTAACAACTACTTTTAATAATTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3750241

TTAGCTAGCGTTTGGCCATAGATTTTCAAATATTATTGGAAAATGTTATTTGAGTGAAAATTTGGATGAAATTTCACCATGTGTTTGGCCATAGGATTTGGGAAATATATTTCACCTTTTTAGAAAAATATGATTTATATATACAAGTTTTAAAAACTATCAAAACTAACTAAAAGTTTGTATTACAAGTCAATTGGATGTTCGTTACAACAATAACAAATAGTGTCCATGACACTAAAGCAATGTAGTAATTTGGAGTGAGTGCAACAAGAATTATTCCATACATCGTGAAGTAGACAAAGTACATGACTTTGTTACCTAGAGCCAATTTTTAATAATTTTCATCAACAATTATATCATTATTTAATATTCACTAAATATTTCATCACTATTTTGGTATTCACGTAAAAAATTATGTAATACAACGCAAGCAACTACTAAAGAGGGTGTTTTTGTAAAAGATAAAAGATTGGGGTAAAATTTAAAATTTTCAAAATATCCCAAATAATGAGATTTGACCCAAATACTAGAAAAAACTAGTATTTGGAAATTTGGGATATTTGCCAAAAATATTTGCCAAATAATGACAAATTGTATGGACAAACATTATTTGCTAAATATTTCCCAAATATTATTTGAAAAATTTATGGCCAAACGGGCCCTTA

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