SE3710247

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11315
  • Solanum lycopersicum
  • SE3710247
  • Tc1/Mariner
  • St1
  • SL2.40ch08:58371526-58371785
  • TA
  • TACTCCCTCCGTCCG

Secondary structure and sequence

TSD    TIR
5'



3' 
      CTC   C  AAAA           TTGCGCT    --------   AGTCAATATCA    TTTTCAAAGGTAAATTAGACCACATTAATTCGATATTTTAAACAAAAAGATATATTCTAAAACTATATGAAAAGT
TACTCC   CGT CG    TGTTTGTCATG       TATC        GAA           CTAA                                                                           
||||||   ||| ||    |||||||||||       ||||        |||           ||||                                                                            
ATGAGG   GCA GC    ACAAACAGTAC       AAGA        TCA           GTTT                                                                           
      AAA   A  CATA           -----CA    TAAAAATC   -----------    GATATTTTTAAAACTGATTGTAAAATTCTTCGTAAAAAAGTAGTATAATTATACGTTTTTTAACATTAAATATCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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