Plant MITE

SE3740248

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11316
Solanum lycopersicum
SE3740248
CACTA
Ca2
SL2.40ch03:8202737-8202951
CGT
CGTCACTTCAACAAAAACAACTTTTAGCAGCATTAAATATTGA

Secondary structure and sequence

TSD TIR

5'

3'

   T    T         CA   T     A     A   -A    -     ATAAATAGTGCTAAAGTCTTTACCCGCATTAGTTAAGTGCTATTAGAACCAATGTTGC
 CG CACT CAACAAAAA  ACT TTAGC GCATT AAT  TTGA CACTA                                                          
 || |||| |||||||||  ||| ||||| ||||| |||  |||| |||||                                                          T
 GC GTGA GTTGTTTTT  TGG AATCG CGTAA TTA  AATT AACGG                                                          
T  -    T         AC   T     C     A   AG    A     CGATTTATACATAAAAATCGCCGTTAACAGTGAGAAACATTTACAGGGATTTGGGAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3740248

CGTCACTTCAACAAAAACAACTTTTAGCAGCATTAAATATTGACACTAATAAATAGTGCTAAAGTCTTTACCCGCATTAGTTAAGTGCTATTAGAACCAATGTTGCTAAAGGGTTTAGGGACATTTACAAAGAGTGACAATTGCCGCTAAAAATACATATTTAGCGGCAAATTAAGAATTAAATGCCGCTAATGGTCATTTTTGTTGTAGTGCGT

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