Plant MITE

SE3710251

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11319
Solanum lycopersicum
SE3710251
Tc1/Mariner
St3
SL2.40ch04:16201264-16201516
TA
TACTCCCTCCGTTTCAAAAAGGATGACCTA

Secondary structure and sequence

TSD TIR

5'

3'

         C    C            -   --G     CA  GAACAAAGTTTAAGATAAGAAAGAAGGCTTTTTAATCTTGTGGTTCTAAATTAAAGTTATGTCAAATATATCAAAATGTCCTTTAA
TACTCCCTC GTTT AAAAAGGATGAC CTA   TTTAA  TG                                                                                      
||||||||| |||| |||||||||||| |||   |||||  ||                                                                                       
ATGAGGGAG CAAA TTTTTCTTACTG GAT   AGAAA  AA                                                                                      
         A    T            A   AAA     --  TTAGACAAATTTTTTCTTACTGGAGAAAGTAAAAGACCATTGTGAAATTGAAATTGAAAAGTGCACTGTACAAATTCTGGTGTTCT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3710251

TACTCCCTCCGTTTCAAAAAGGATGACCTAGTTTAACATGGAACAAAGTTTAAGATAAGAAAGAAGGCTTTTTAATCTTGTGGTTCTAAATTAAAGTTATGTCAAATATATCAAAATGTCCTTTAATCTTGTGGTCTTAAACATGTCACGTGAAAAGTTAAAGTTAAAGTGTTACCAGAAAATGAAAGAGGTCATTCTTTTTTAAACAGATTAAAAAGAAAATAGAGTCATTCTTTTTTAAACAGAGGGAGTA

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