SE3720252

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11320
  • Solanum lycopersicum
  • SE3720252
  • Mutator
  • M7
  • SL2.40ch04:60454687-60455065
  • ATTAATATT
  • ATTAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
         -AT   AAA     --C    AT  CACATTTAAGTTCTCTTATTACCATTACCCCCTATTAGTTTTTACAAATTTCTCATTTCATGTATAAGATTAATGTACCAGTGCATCAGATTAATGTATCTCGGCATCAAATTAATGTATCTCGCGCATCATATTAGTATATCATGTATAAAAGGTACATC
   ATTAAT   TGG   AATGA   AGAA  CT                                                                                                                                                                 
   ||||||   |||   |||||   ||||  ||                                                                                                                                                                  
   TAATTA   ATT   TCCTG   TTAG  TG                                                                                                                                                                 
TTA      CCC   ---     TTT    --  TATGAAAATTCCATTTAATAATAAACCAGGAATATTCAAATATTAATATCTTTAGGAAGTTTGACTATGTTATTATATTCGCGTCTATGTAATAAGACTAAGTGCTCTATGAAATTAGCAATTCATTTTATGTAATATAAAATATGTACTGTGTCATTAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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