SE3730260

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11328
  • Solanum lycopersicum
  • SE3730260
  • hAT
  • Hat7
  • SL2.40ch05:44309612-44310219
  • TAACCTAA
  • ATAGAGCTGTCAATATGGGCT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAACCTA                     ACCCCACCCCATC    -  AACCAATACAAGCTTCGACATTTTATGGGTCAGGCCGACTAGCCCATTTTTTGTGTGGGCCAGAAAATAGCCAGCCCAACCCACAAGTACGTGGACTACAGGCTTGTTGGGACAGCTCACTTTTTAAAAAATTATATTATTTTTAGAATTATTAAATTTTATTATAAATTATAATTTAAAAATATTATCACAAATATCGACAAAACAATATTACATGATGTTAATGTTACTACTTTTTAATCAAATCCACAAATAAAATTATT
       ATAGAGCTGTCAATATGGGCT             CGGA CT                                                                                                                                                                                                                                                                       
       |||||||||||||||||||||             |||| ||                                                                                                                                                                                                                                                                        
       TATCTCGGCAGTTATACCCGA             TCCG AC                                                                                                                                                                                                                                                                       
AATCCAA                     -------------    T  AACCCAGCCGGCCTGTATTGAGCTCTAAATTATCCCAACCTGATGCTAAAAGCTCGGGTAAACTCTTTTTCCGAAAAAGCGGGCCGGATTTATTTAAACGACTAAACACCCCGAAGTCTATATAACCATCCTTTTAATTAAAATTTTATATTATATTATAATTTTAAATTTTAATTTCCTCAGGTATGAGTTTTTTTATTAATACCATAAAAATAAATCTATAAATATGAAAATGAACTTTTTTTAAATTATTTATGATATTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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