SE3720262

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11330
  • Solanum lycopersicum
  • SE3720262
  • Mutator
  • M7
  • SL2.40ch04:60167474-60167819
  • TTTTTTTTG
  • G

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTTTTTTG   C -- C          -   ATACTTTTAAGGTAAATTTATTATCTATTCCTTATAAATTTATAATATAAAAATCTCTCAAACTGATATAATAATATAAGCGTTAATACATTATTCTGATGTGCGAGATACATTAATTGTTAAGTAAGATACATTACATTTTAT
         GGG A  A GGATAAAATT TAC                                                                                                                                                
         ||| |  | |||||||||| |||                                                                                                                                                 
         TCC T  T TACTGTCTTT AGT                                                                                                                                                
 CTTTTTTT   - AT -          A   TATAAATTCAAGAGAATAACAGTAATAGAGGATAATCAAAATATTTAAAAGTTTTAAGAATTAAAAATGTATAGTTTAATTACATAGAGCGAGTAGTCTAATCACATAGTACATATTTTATATGTAGTTTAATCACATAGTACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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