SE3720267

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11335
  • Solanum lycopersicum
  • SE3720267
  • Mutator
  • M11
  • SL2.40ch09:4746466-4746866
  • CTCAAAAGG
  • TGAGGTTTTAACCAAAATAAGCTATTATATAAAGTTATTCACCAAAATAATATGTTTTTTTAAAATTTTACAAAATTAGTATAAATGTATTCCACAGTAACGTTTTAGGATATATTTTATTTTTTAAAAGTTGATGGCGTCAGATTGATATACGTTACTCACAGTAACATTTTACTCCTAAAACGTTATTGAAAATAACGTTTTAAAAGTAAAACGTTACTTGCAGTAACGTATATCAACCTAATGTTGTTAGTTTTTAAAAAATAAAATATACCCTAAAACGTTACCATGAAATACGTTTATACTAGTTTTGTAAAATTTTAGAAAAATATATTACTTTGGTAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCCTCA

Secondary structure and sequence

TSD    TIR
5'



3'
CTCAAAAGG     ---           A    C            TT   C      A                                            C  CA             A                              C  A               -  C      A       CC            G
         TGAGG   TTTTAACCAAA TAAG TATTATATAAAG  ATT ACCAAA TAATATGTTTTTTTAAAATTTTACAAAATTAGTATAAATGTATT CA  GTAACGTTTTAGG TATATTTTATTTTTTAAAAGTTGATGGCGT AG TTGATATACGTTACT CA AGTAAC TTTTACT  TAAAACGTTATT 
         |||||   ||||||||||| |||| ||||||||||||  ||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||| || |||||| |||||||  |||||||||||| A
         ACTCC   AAAATTGGTTT ATTC GTAATATATTTT  TAA TGGTTT ATTATATAAAAAGATTTTAAAATGTTTTGATCATATTTGCATAA GT  CATTGCAAAATCC ATATAAAATAAAAAATTTTTGATTGTTGTA TC AACTATATGCAATGA GT TCATTG AAAATGA  ATTTTGCAATAA 
   TGGAAA     TTA           G    A            GT   A      C                                            A  AC             C                              A  C               C  -      C       AA            A

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End