SE3720269

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11337
  • Solanum lycopersicum
  • SE3720269
  • Mutator
  • M1
  • SL2.40ch11:41161347-41162088
  • TTATAAGAA
  • AAGGGAAAAGGATCTGATATACCCCTCAACTTTGTCATTTAAAGCTGATATACCCCTTATTATGAAAGTGACAAATATATATCCCTACTTATAAACAAATGACTCACATATAACCT

Secondary structure and sequence

TSD    TIR
5'



3'
TTATAAG           A                 C          AA       A     C  A           A AA      A   C    TA  A       A          A   ------     TCTAATGGAAATGAAAAAATTATAATTCTTAATTAGTTTTTCTAAATAATATAATCCAATACGAGTAAATTTAATCCTCTTCAAGTATAATTTGATTTTTTTAATGACTAATTTAGAATTATTATTTTGGTAATCAAATTTATTTATGTTTCACTAATATTCTTGTAAAACTTATTGTAGATGACCAAATTTTATTCTTTGAATACAAAAATCAAATTACAATATAGACAAAAAAATAGT
       AAGGGAAAAGG TCTGATATACCCCTCAA TTTGTCATTT  AGCTGAT TACCC TT TTATGAAAGTG C  ATATAT TCC TACT  TA ACAAATG CTCACATATA CCT      TTTCC                                                                                                                                                                                                                                                
       ||||||||||| ||||||||||||||||| ||||||||||  ||||||| ||||| || ||||||||||| |  |||||| ||| ||||  || ||||||| |||||||||| |||      |||||                                                                                                                                                                                                                                                 
       TTCCCTTTTCT AGACTATATGGGGAGTT AAACAGTAAA  TCGACTA ATGGG AG AATACTTTCAC G  TATATA AGG ATGG  AT TGTTTGC GAGTGTATAT GGA      TGTTT                                                                                                                                                                                                                                                
AAGAATA           C                 A          CC       A     C  C           C AG      C   A    CA  A       C          G   CAGCAA     TACTCGAGTGTATATGGGAAGTAAATTACCTTCAATTTTTTTAATCAAAATTTAAATATAAAAAATGAAAAAATTTTTTTTAATAAATCCACATGTATACTAAGAACATAGTTTCAAGCTCCATATCAAATTAAAAAAGTATGTAATTAATAAAAACCTGAAGAAAACAATATTAATAAACTGAAAGAATAAGGATATATAATAAAAATAGTAAGGAATCAAATTTCTTTTTTTTAATTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End