SE3720271

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11339
  • Solanum lycopersicum
  • SE3720271
  • Mutator
  • M3
  • SL2.40ch11:1274725-1275404
  • TATATTTAT
  • ATATTTATGGG

Secondary structure and sequence

TSD    TIR
5'



3' 
T   TT      AT    ---  -        ACAAACTAATAATATAAAATATATATAGTACCTATCCTTTGATTTATTTGTGTTCCATGGCAAATTGTTTGTCAGTCGCTCTCTCCGTCACATTCTCGCTCGCCACTCTCCCTCTGTCGCTCGCCTCTCTCGCTTTATACAATAGAATTGTGTAAGTTGTGTTTCTAACTGTATAAAGCGAGAGAAAATTGTATAAACACATGCAAATACATATATCTTCGTCCTATGCACTTATAATTATACAATACAAATATTTCCCTGCCCAAGTCTCTTTCGCCTTTCTCGTTTTATACAAATTCAAATTGTATATA
 ATA  TATGGG  AATT   GT ATAAAATG                                                                                                                                                                                                                                                                                                                       
 |||  ||||||  ||||   || ||||||||                                                                                                                                                                                                                                                                                                                        
 TAT  ATATCC  GTTG   GT TATATTTA                                                                                                                                                                                                                                                                                                                       
    TT      -C    AAA  A        TATTTTAAATATAAACATACAATATCATTTTAAACGTATTAACGCGAGGTATCGTTTGAATATATATATTAAACGATATGTGTATGTTAACTTCGCTTAACATACTTTGCTCTTTCTCTCTTTAATATATGTTAAACTTAACATATTTTGTTCTTTCGCTCTTTCCGTTTTAACTTAACATATTTTACTCTTTAACTCTTTAATATATGTTAAACTTAAACATATTTTACTCTTTCTCTTTTTCCATTTTTCTCTGAACACGTACCTTATATGTTAACTTAGCTTAACATATTTTACTCTTTCTCTCTTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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