SE3730274

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11342
  • Solanum lycopersicum
  • SE3730274
  • hAT
  • Hat14
  • SL2.40ch10:58367706-58368276
  • TGATAACG
  • CGTAGGGCT

Secondary structure and sequence

TSD    TIR
5'



3' 
TGATAA         --------   CGAAACCGAACCGAAATCGATAAGCTGAACCGATAAAAAAGTTATTAATTTATATTATTGGGTTATTGGTTTAGTGGTTTTGATGATGGTTTTGATTTTTTTTGTTATCGGGTTATTGATTTTTTAACGGTTTAAAATTTTTTCTTAACGGGTTAACCGATAACCCGATAGTAAATTAAATAATAATATTTATACCATTTTGTATATAAAGTCCTCGACTTAGAGTTTAATTTCCTACTTTTGTTTTTGGTTATCTCAAATAC
      CGTAGGGCT        GTT                                                                                                                                                                                                                                                                       
      |||||||||        |||                                                                                                                                                                                                                                                                       T
      GTATCCCGA        CGG                                                                                                                                                                                                                                                                       
GCAATA         GATATAGC   CCAAGCCAAAACTTCAAATACCCCAACCGAATAACCAATAACCAAACATCTCTACGATTTGGCAATATCTTGGTAATTCTATAACCAAATAGCCAAAAACTAGCAATAGCCACGCCAATAGCCAAATTGGCAATTCTAAACTAAGTTTTCTTTTTTGTAACTTTTAGTGAATCTTTGTTCCACTGATTGGTTTATTTGATACGAAAACTCAAGTGTTCAATGTAGAACGAATTTTCGTTTGTGAAAATGCAACATTTATTAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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