SE3720276

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11344
  • Solanum lycopersicum
  • SE3720276
  • Mutator
  • M2
  • SL2.40ch01:72420512-72420834
  • TTTATTATT
  • TATTATTGGGATAATGCACAAGTACCCCTCAACCTATGCCCGAAATCCCAAAGACACACTTATACTATACTAAGGTCCTATTACCCCCTGAACTTATTTTATAAATAATTTTCTACCCCTTTTTAGCCTACGTGGCACTAGTTTG

Secondary structure and sequence

TSD    TIR
5'



3'
TT  T  TT          A          -                   C  A                                                   A         C           AGC             G    AAAAAAA G     CT
  TA TA  GGGATAATGC CAAGTACCCC TCAACCTATGCCCGAAATC CA AGACACACTTATACTATACTAAGGTCCTATTACCCCCTGAACTTATTTTAT AATAATTTT TACCCCTTTTT   CTACGTGGCACTA TTTG       A TCAAC  
  || ||  |||||||||| |||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||   ||||||||||||| ||||       | |||||   
  AT AT  CCCTATTACG GTTCATGGGG AGTTGGATACGGGCTTTAG GT TCTGTGTGAATATGATATGATTCCAGGATAATGGGGGACTTGAATAAAATA TTATTAAAA ATGGGGAAAAG   GATGCACCGTGAT GAAC       T GGTTG  
TT  T  TT          G          G                   A  C                                                   A         A           CAA             A    ----ACC G     CT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End