Plant MITE

SE3710277

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11345
Solanum lycopersicum
SE3710277
Tc1/Mariner
St3
SL2.40ch03:48761165-48761416
TA
TACTCCCTCCGTTTAAAAAAGAATGAT

Secondary structure and sequence

TSD TIR

5'

3'

     C   C    AAA          ----------------C    T   TT TTAGTCTGTTTCAAAAAGAATGATCCTTTTCCTTTTTTAGCAACACTTTGATTTTAACTTTCCACGTGACATGTTTAAGA
TACTC CTC GTTT   AAAGAATGAT                 CTAT TCC  T                                                                                
||||| ||| ||||   ||||||||||                 |||| |||  |                                                                                C
ATGAG GAG TAAA   TTTCTTACTA                 TTCA AAT  T                                                                                
     A   A    GTC          ATCAAACTAAACCTTAC    -   -- CATTTCTTTTTTCTAAAAAATTTGAACACCAAGATATAGTGTCAATATAGTTTACATAGTTTTACAGGAAATTAGTACAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3710277

TACTCCCTCCGTTTAAAAAAGAATGATCCTATTTCCTTTTTAGTCTGTTTCAAAAAGAATGATCCTTTTCCTTTTTTAGCAACACTTTGATTTTAACTTTCCACGTGACATGTTTAAGACCACATGATTAAAGGACATTTTGATACATTTGATATAACTGTGATATAGAACCACAAGTTTAAAAAATCTTTTTTCTTTACTTAAACTTCATTCCAAATCAAACTAATCATTCTTTCTGAAATAGAGAGAGTA

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