SE3720279

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11347
  • Solanum lycopersicum
  • SE3720279
  • Mutator
  • M14
  • SL2.40ch07:49335790-49336113
  • TTATTTAAT
  • TATTTAATGGAAAA

Secondary structure and sequence

TSD    TIR
5'



3'
T  TT   T      ATGC       C               CAA      T    C   C        TTG                T      -C    A        T   A     C       T G  A    A    CCAAATAT  CC     GCCT
 TA  TAA GGAAAA    ACAAGTA CCCCTAGACTATGAT   AATTTT GAGA ACA CTTAACTA   TAAGGTCCTATTACCC CTTGAA  TTAT TTTTTTTG AAT TTATG ACCTTTT G TT ACGT GCAT        CT  CACGT    
 ||  ||| ||||||    ||||||| |||||||||||||||   |||||| |||| ||| ||||||||   |||||||||||||||| ||||||  |||| |||||||| ||| ||||| ||||||| | || |||| ||||        ||  |||||    T
 AT  ATT CCTTTT    TGTTCAT GGGGATCTGATACTG   TTAAGG CTTT TGT GAATTGAT   ATTCCAGGATAATGGG GGACTT  AATA AAAAAAAC TTA AATAT TGGAAAA C GA TGCA CGTG        GA  GTGCG    
A  TT   C      -AAA       A               TGC      T    A   A        TTG                -      AA    A        T   A     A       - G  A    C    TAAGGCAT  -A     TTAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End